Student-Faculty Programs Office
Summer 2017 Announcements of Opportunity

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Project:  Solving big data problems in bioengineering
Disciplines:  Computer Science, Data Science
Mentor:  Viviana Gradinaru, Assistant Professor , (BBE), viviana@caltech.edu, Phone: +1-626-395-6862
Mentor URL:  http://glab.caltech.edu/  (opens in new window)
Background:  The Gradinaru lab is looking for talented and highly motivated computer science majors to design and implement algorithms for various bioengineering applications. The Gradinaru lab uses advanced technologies such as optogenetics, CLARITY, physiology, imaging, protein engineering, deep sequencing and behavior to understand and develop therapies for neurological diseases.
Description:  Example projects include but are not limited to: registration of 3D images, automatic cell counting, sequence alignments and pattern recognition in big data sets and processing real-time calcium imaging data.
References:  http://glab.caltech.edu
http://www.ncbi.nlm.nih.gov/pubmed/25088144
Student Requirements:  “Required”: Basic knowledge in Algorithm design, strong quantitative and programming skills (e.g. proficient in one or more of: MATLAB, Python and R).

“Preferred”: Background in image processing and/or deep sequencing data analysis, machine learning and deep learning.
Programs:  This AO can be done under the following programs:

  Program    Available To
       Amgen Scholars    Non-Caltech students only  
       SURF    both Caltech and non-Caltech students 

Click on a program name for program info and application requirements.


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Problems with or questions about submitting an AO?  Call Jen Manglos of the Student-Faculty Programs Office at (626) 395-2885.
 
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